PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G016300.1
Common NameB456_003G016300, LOC105787551
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 551aa    MW: 56518.9 Da    PI: 8.5826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G016300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056183123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Gorai.003G016300.1 61 FVCEICNKGFQRDQNLQLHRRGH 83
                        89*******************88 PP

2zf-C2H211.10.0013137159123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k +  +s+ k H + +
  Gorai.003G016300.1 137 WKCDKCSKKYAVQSDWKAHSKIC 159
                         58*****************9876 PP

3zf-C2H211.40.00097167185523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg++Fsr++++ +H   +
  Gorai.003G016300.1 167 DCGTVFSRRDSFITHRAFC 185
                         9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.56E-76083No hitNo description
Gene3DG3DSA:3.30.160.601.8E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355190102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.56E-7132157No hitNo description
SMARTSM00355150137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MPVEVDNSST VSGNASVSST GNQSPPPKST VKKKRNLPGM PDPDAEVIAL SPTTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKK VYVCPEPTCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT VFSRRDSFIT  180
HRAFCDALAV ESAKTQTNLS SEPDPKVQAA DSLPPPASPP VSAPSAVTFS DMPIQSSVLA  240
EVPSIIVEKA AAPAPAPAPA PALAPAPPPA SLNGSCSTSV SLISSGCSSS SGVFSSLFTS  300
STVSASIRPP QPTAPAPPSA GLNGSCSGCI SLVSSGASNS SSSGVFASLF ASSTVSASIQ  360
PPQPPPLTNL IRPDLAPSAS IEPISLCLST SHGSSIFGTA GQEHRQHAPS LQPAMSATAL  420
LQKAAQMGAA ASNASLLRGL GIVSSSAPQE NLQWGQAQVD PDNASIAAGV GLGLPCDGSS  480
GLKELMMGTP VFGPKQTTLD FLGLGVAAGG NPTAGLSALI TSIGGGFDAA TAAASFRGGD  540
YTDKDIGRSS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.30141e-111flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487926691e-111
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469449.10.0PREDICTED: protein indeterminate-domain 2-like
RefseqXP_012469450.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-177IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLA0A0D2QEE10.0A0A0D2QEE1_G
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-110indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]